I'm with bbs, exept I didn't know the new sheetmetal is thinner, if you look at alot of brand new cars and stick block them,you will also see plenty of waves and imperfections,I remember mid 90s Fords,every panel looked like it was bulging out right in the middle ,
most likely the replacement panels is not properly fitted and is distorted because of misalignment,plus you need to keep in mind most of the replacement sheetmetal comes from China ,which is known for cheap,parts,which are made out of softer steel
Stefan