I highly recomend the fastener guide. It's money well spent if you have a tub filled with nuts/bolts. It's very detailed. I have noticed a few omissions, mostly with the newer cars since most stock resto's are of the 70 and 71's.
For instance, it lists two different seat track to floor pan nuts. Both are zinc dichromate plated and have a toothed washer. The difference is in the diameter of the washer. Well, my 73 Challenger(HooDs 73 Cuda used the same nuts) used a phosphated nut with NO teeth on the washer. There is no mension of these nuts in the guide. They also don't list what fasteners are correct to hold the Rallye fender louvers to the fenders.
I have no experience with the restoration guide but here is a list of some of what you are looking for.
brake booster/master and cover.....they were assembled first and then sprayed gloss black as an assembly
driveshaft....bare unpainted
upper control arms.......natural unpainted
lower control arms.......natural but dipped in cosmoline just shy of the lower ball joint
torsion bars.......dipped in very cheap gloss black paint that lost some of it's gloss very quickly
leaf springs....natural unpainted(some Challenger T/A's have been found with black springs)
fuel filler tube....lead dipped(this process isn't done anymore due to EPA regulations)
blower motor....zinc plated in 70-71...not sure about 72...73-74 they were black
The trunk latch and the door latches were zinc plated. The hood latch and safelty hooks varied by year. My 73 was brown phophate.
Check out this Moparts link. There are many many great reference pics in this thread.
http://board.moparts.org/ubbthreads/showflat.php?Cat=0&Board=A12&Number=4501907&fpart=&PHPSESSID=