Do you know that the factory FSM recommends these clearances to be .0015 to .0025 for street engines? The Engine manual recommends .0025 to .0035 for race applications. Yes, you are on the tight end of things, but odds are your engine will live fine with .0015 rod clearance provided your oil system is all up to snuff with a good pump, pickup, baffled pan, and a high quality oil.
However, if you really want to extra thou of clearance, the crank will need to come out for some polishing. A thou is not a lot, but if you tried doing this type of polishing by hand, it is a huge amount. Have the shop do it so they can ensure no taper is introduced in the process. I would think .0025 clearance with taper would be a worse situation to have than .0015 with a nice flat journal.