lot os answer here , not sure why I missed it so long
you can drill a balance hole higher up in thte reservoir , this will allow the fluid to balance but if one side went low it would nto drain the other chamber .
The rubber behind the brake flaer is the residual pressure valve , the keeps the seal expanded so they do not leak , only drum brakes have this problem .
Front is rear & rear is front always , the most important brakes / fronts do most of the work & are closest to the pedal .
Often missed is under hood air flow , it is easy to get air under the hood but it also has to have a way out . The Shaker seems to add / retain a lot of under hood heat , you are not the first to encounter this . the air has to get out under the car but with the large tube headers this may be an issue also . We had a similar problem with a 340 stuffed into a D50 pick up , we did add louvered vents to the hood & solved the problem but I am not suggesting you do that .
Build a heat sheild , a piece of sheet steel between the master & headers , this will drop temps dramatically to the master as long as there is an air gap between the sheild & master cyl .
You need to make or have the factory heat sheilds near the fuel tank also , one of my customer has fuel boiling in he tank & we narrowed it down to the tank being flat black , enough light was reflecting off the concrete to boil the fuel , we put a light coat of silver on the tank & no more boiling fuel !