Your question is whats the difference between 69 Roadrunners and GTX's, so here goes:
69 Roadrunners were available with 3 motors...383 4 bbl, 440-6 bbl, and 426 hemi.
69 GTX's were available with 2 motors...440-4 bbl and 426 hemi.
GTX's were basicly fully dressed up B bodies, standard top line interiors with top level trim, exterior top level trim, unique GTX badging on the grille and trunk. Had a GTX specific trunk trim panel. GTX's and top of the line Sport satellites shared most of the trim. Could be had with an air grabber or not. The 4 speed cars would have a mandatory Dana 60 rear, 3.54 or 4.10 ratio. Automatics were standard with 8 3/4 rears, optional dana 60.
Roadrunners were stripped down Satellites with a standard 383 4 speed. Only engine option at the start of the model year was the hemi. In the spring of 69, the 440-6 lift off hood cars were brought out. They were a option package car (A-12) and had the fiberglass hood, standard Dana 60 rears, black 15 inch wheels with chrome lug nuts, and specific 440-6 call outs on the hood.
Starting in mid 68, you could dress up your roadrunner with interior and exterior option packages that would offer higher levels of trim. Standard roadrunners still had the low level interiors and minimal exterior level trim. Bench seats, column shifted automatic trans were the norm.
A small block Roadrunner was introduced in 1972 (340)...until then NO roadrunners had a small block in them. 1973 saw the first 318 available in the runner, and the elimination of the 440-4 speed combination.
72 was the first year the GTX and Roadrunner was a combined model. The GTX became an option package on the Roadrunner. It got you the 440 engine. NO roadrunners were available with a 440-4 bbl without the GTX option. There were a few cars that snuck out of the factory in the 72 model year with the 440-6, but the top dog drivetrain that was available was the 440-4 bbl with 4 speed and 3.54 dana 60. After 72, only automatics were allowed with 440's.