Can you work the throttle and watch the lever down on the transmission move along with it? (careful dont just load up your motor full of fuel.).
If it all seems like its working fine, you need to use some of the adjustments that are built into that linkage to get the transmission lever to push back more than it currently is. What thats doing is telling your transmission how much throttle you are on. As your carb linkage gets pulled back, it relays that down to the transmission and moves that lever back.
So if you leave from a light, 100% throttle, it will raise the shift points (trans lever almost 100% back). If you take off like a grandma, it lowers them. Basically what you are finding is that its taking off, boom, boom, third gear. Shifting too soon, so you need to get that transmission lever back further to raise your shift points up to where they should be.
You should be able to spot the lever from looking down the engine bay with a flashlight onto the transmission. Just follow that linkage down. Make sure its all moving! You can, and will hurt your transmission with excessivlely low throttle pressure due to a lower line pressure allowing your clutches to slip and not hold. (atleast thats how i remember it, tactrans will set me straight lol)
-Mike