First, stop driving and running it. You can and will do a lot more damage trying to find it "the easy way". It sounds like cam or valvetrain. So you've pulled the valve covers... Leave the rockers and pushrods in place. Pull the intake off and look very carefully. You can turn it over BY HAND, but dont run it any more until you can see the entire system. Also pull each spark plug and carefully inspect it and keep them in order. If everything looks good, get your hands on a leak down tester and test it. Diagnose with eyes and head, not ear, unless you want to tear it all down again.