I'd have the frame checked for straightness. The front and rear suspension hang from the frame rails. If the car is not straight the car will never track correctly.
The other thing to consider is that these cars are not body on frame construction, they are unitized construction which means the floor pans, trunk pan, the cowl/firewall, the roof, pillars, windshield frame and the frame rails all add to the structural integrity of the car. Since your frame rails are not OEM you should ensure that they are welded in a similar manner to OEM and are at least the same metal gauge thickness and cover the same area as OEM.