If you ever run it hot, it buys you that much more time before it will boil over.
That also means you putting that much more pressure into the entire system. That can expose weak seams, bad solder joints, soft hoses, etc.
I don't see it as a big deal as most of the cars use a 14# cap. I'm a bit suprised that it would come with a 9# on it. FWIW, I use 20-22# caps on my hot rods. My more stock oriented cars have 14-16 pounders.