I will assume you have the original style 4-prong ballast, on the input side there are two sets of wires brown & green. One gets power only during start the other gets power in the run position, they would always be 12V, on the output side you will see dropped voltage because that's what the ballast does.
If your not getting 12V, battery voltage, on the input side there is a bad connection somewhere, can even be the ignition switch but I would suspect a poor connection with all that's gone on removing/installing the motor.