All I know is that the proper way, it did not clear on the pass. side. And it was worse on the driver side. When I flipped them around to the position it is in now, it cleared the drive shaft and everything on the pass side but had very minimal clearance. The driver side did not fit either way. Either way, it will have to come apart and get fixed the correct way, bending the head pipe or not.
Again, if it did not fit in the way it was designed, which was the first way, what would you have done?